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Biotechnology Information microarray gene expression datasets
Microarray Gene Expression Datasets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray gene expression datasets - by Bioz Stars, 2026-10
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Related Articles

Gene Expression:

Article Title: Human hepatocytes support the hypertrophic but not the hyperplastic response to the murine nongenotoxic hepatocarcinogen sodium phenobarbital in an in vivo study using a chimeric mouse with humanized liver.
Article Snippet: .. The gene expression microarray data can be downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (accession no. GSE57058, GSE57055, GSE57056, GSE57057 for all models, CD-1 mouse, chimeric mouse, and WH rat, respectively; http://www.ncbi.nlm.nih.gov/geo/info/linking.html.). .. mRNA expression levels of selected genes were determined in livers of all surviving animals from each model. Quantitative real-time PCR assays for the mRNAs listed in Supplementary table 1 were performed following the instruction manual of the PCR system (7500 Fast Real-Time PCR System, Applied Biosystems).

Article Title: Exploring and characterizing a novel combination of paeoniflorin and talatizidine for the treatment of rheumatoid arthritis.
Article Snippet: Wutou Decoction (WTD) achieves favorable therapeutic response in treating rheumatoid arthritis (RA), especially for wind-cold-dampness stimulating RA.. However, its material basis and molecular mechanisms remain unclear.. To address this problem, the main bioactive compounds (BACs) of WTD against RA and the candidate targets were identified in the current study via transcriptional regulatory network analysis, computational structure-based methods, as well as in vivo and in vitro experimental validations.

Article Title: Placenta to cartilage: direct conversion of human placenta to chondrocytes with transformation by defined factors
Article Snippet: .. National Center for Biotechnology Information Gene Expression Omnibus gene expression microarray data were submitted under accession number GSE29745. ..

Article Title: Chemical Inhibition of Histone Deacetylases 1 and 2 Induces Fetal Hemoglobin through Activation of GATA2
Article Snippet: .. All relevant data are within the paper, with the exception of gene expression microarray and ChIP-Seq data, which are available at the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) website under super series accession number GSE60793. ..

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency.
Article Snippet: .. PLOS Genetics | https://doi.org/10.1371/journal.pgen.1009587 May 25, 2021 2 / 21 GSE89976) and Gene expression microarray (GSE54848, GSE156834, GSE159101, and GSE171627) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. ..

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency
Article Snippet: All graphs and heatmaps were generated using GraphPad Prism 8 software (GraphPad). .. RNA-seq and ChIP-seq (GSE56569 and GSE89976) and Gene expression microarray (GSE54848, GSE156834 and GSE159101) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. .. This work was supported by Grants-in-Aid for Scientific Research (20K20585) from the Japanese Society for the Promotion of Science (JSPS); a grant from the Core Center for iPS Cell Research (19bm0104001h0007), Research Center Network for Realization of Regenerative Medicine from Japan Agency for Medical Research and Development (AMED); a grant from the Japan Foundation for Applied Enzymology; a grant from the Fujiwara Memorial Foundation; a grant from the Takeda Science Foundation; and the iPS Cell Research Fund from Center for iPS Cell Research and Application, Kyoto University.

Article Title: Downregulation of Dystrophin Expression Occurs across Diverse Tumors, Correlates with the Age of Onset, Staging and Reduced Survival of Patients.
Article Snippet: .. Gene expression microarray data for skeletal muscle samples from DMD patients (n = 12) and healthy donors (n = 11) was obtained from the dataset GSE1004 available at the Gene Expression Omnibus (GEO) from the National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/geo/, accessed on 23 May 2022). ..

Microarray:

Article Title: Human hepatocytes support the hypertrophic but not the hyperplastic response to the murine nongenotoxic hepatocarcinogen sodium phenobarbital in an in vivo study using a chimeric mouse with humanized liver.
Article Snippet: .. The gene expression microarray data can be downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (accession no. GSE57058, GSE57055, GSE57056, GSE57057 for all models, CD-1 mouse, chimeric mouse, and WH rat, respectively; http://www.ncbi.nlm.nih.gov/geo/info/linking.html.). .. mRNA expression levels of selected genes were determined in livers of all surviving animals from each model. Quantitative real-time PCR assays for the mRNAs listed in Supplementary table 1 were performed following the instruction manual of the PCR system (7500 Fast Real-Time PCR System, Applied Biosystems).

Article Title: Exploring and characterizing a novel combination of paeoniflorin and talatizidine for the treatment of rheumatoid arthritis.
Article Snippet: Wutou Decoction (WTD) achieves favorable therapeutic response in treating rheumatoid arthritis (RA), especially for wind-cold-dampness stimulating RA.. However, its material basis and molecular mechanisms remain unclear.. To address this problem, the main bioactive compounds (BACs) of WTD against RA and the candidate targets were identified in the current study via transcriptional regulatory network analysis, computational structure-based methods, as well as in vivo and in vitro experimental validations.

Article Title: Placenta to cartilage: direct conversion of human placenta to chondrocytes with transformation by defined factors
Article Snippet: .. National Center for Biotechnology Information Gene Expression Omnibus gene expression microarray data were submitted under accession number GSE29745. ..

Article Title: Chemical Inhibition of Histone Deacetylases 1 and 2 Induces Fetal Hemoglobin through Activation of GATA2
Article Snippet: .. All relevant data are within the paper, with the exception of gene expression microarray and ChIP-Seq data, which are available at the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) website under super series accession number GSE60793. ..

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency.
Article Snippet: .. PLOS Genetics | https://doi.org/10.1371/journal.pgen.1009587 May 25, 2021 2 / 21 GSE89976) and Gene expression microarray (GSE54848, GSE156834, GSE159101, and GSE171627) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. ..

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency
Article Snippet: All graphs and heatmaps were generated using GraphPad Prism 8 software (GraphPad). .. RNA-seq and ChIP-seq (GSE56569 and GSE89976) and Gene expression microarray (GSE54848, GSE156834 and GSE159101) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. .. This work was supported by Grants-in-Aid for Scientific Research (20K20585) from the Japanese Society for the Promotion of Science (JSPS); a grant from the Core Center for iPS Cell Research (19bm0104001h0007), Research Center Network for Realization of Regenerative Medicine from Japan Agency for Medical Research and Development (AMED); a grant from the Japan Foundation for Applied Enzymology; a grant from the Fujiwara Memorial Foundation; a grant from the Takeda Science Foundation; and the iPS Cell Research Fund from Center for iPS Cell Research and Application, Kyoto University.

Article Title: Downregulation of Dystrophin Expression Occurs across Diverse Tumors, Correlates with the Age of Onset, Staging and Reduced Survival of Patients.
Article Snippet: .. Gene expression microarray data for skeletal muscle samples from DMD patients (n = 12) and healthy donors (n = 11) was obtained from the dataset GSE1004 available at the Gene Expression Omnibus (GEO) from the National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/geo/, accessed on 23 May 2022). ..

Chromatin Immunoprecipitation:

Article Title: Chemical Inhibition of Histone Deacetylases 1 and 2 Induces Fetal Hemoglobin through Activation of GATA2
Article Snippet: .. All relevant data are within the paper, with the exception of gene expression microarray and ChIP-Seq data, which are available at the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) website under super series accession number GSE60793. ..

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency
Article Snippet: All graphs and heatmaps were generated using GraphPad Prism 8 software (GraphPad). .. RNA-seq and ChIP-seq (GSE56569 and GSE89976) and Gene expression microarray (GSE54848, GSE156834 and GSE159101) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. .. This work was supported by Grants-in-Aid for Scientific Research (20K20585) from the Japanese Society for the Promotion of Science (JSPS); a grant from the Core Center for iPS Cell Research (19bm0104001h0007), Research Center Network for Realization of Regenerative Medicine from Japan Agency for Medical Research and Development (AMED); a grant from the Japan Foundation for Applied Enzymology; a grant from the Fujiwara Memorial Foundation; a grant from the Takeda Science Foundation; and the iPS Cell Research Fund from Center for iPS Cell Research and Application, Kyoto University.

RNA Sequencing:

Article Title: The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency
Article Snippet: All graphs and heatmaps were generated using GraphPad Prism 8 software (GraphPad). .. RNA-seq and ChIP-seq (GSE56569 and GSE89976) and Gene expression microarray (GSE54848, GSE156834 and GSE159101) results are accessible in the Gene Expression Omnibus database of the National Center for Biotechnology Information website. .. This work was supported by Grants-in-Aid for Scientific Research (20K20585) from the Japanese Society for the Promotion of Science (JSPS); a grant from the Core Center for iPS Cell Research (19bm0104001h0007), Research Center Network for Realization of Regenerative Medicine from Japan Agency for Medical Research and Development (AMED); a grant from the Japan Foundation for Applied Enzymology; a grant from the Fujiwara Memorial Foundation; a grant from the Takeda Science Foundation; and the iPS Cell Research Fund from Center for iPS Cell Research and Application, Kyoto University.



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Image Search Results


Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques: Functional Assay

Journal: bioRxiv

Article Title: Integrative Multi-Omic Profiling of the Human Phosphatome Identifies DUSP15 as a Tumour-Selective Regulator of Immune-Metabolic Reprogramming in Chromophobe Renal Cell Carcinoma

doi: 10.1101/2025.11.15.688610

Figure Lengend Snippet:

Article Snippet: Gene Expression Omnibus (GEO) microarray datasets used for independent validation were obtained from the National Center for Biotechnology Information (NCBI) GEO repository ( https://www.ncbi.nlm.nih.gov/geo/ ) under accession numbers GSE2748, GSE11024, GSE11151, GSE12090, GSE16441, GSE17895, GSE19982, GSE36895, GSE46699, and GSE53757.

Techniques: Expressing, Microarray